Plot distribution fits

Plot predicted Ct distribution fits from model

plot_distribution_fits(
  chain,
  obs_dat,
  MODEL_FUNC,
  nsamps = 100,
  pos_only = TRUE
)

Arguments

chain	A dataframe containing the MCMC samples
obs_dat	A dataframe containing observed Ct values and time of sample collection. NULL by default.
MODEL_FUNC	Function that expects a vector of model parameters with names corresponding to the parameter control table and returns a single log posterior probability
nsamps	Number of samples. Defaults to 100.
pos_only	pos_only flag uses only Ct values below the limit of detection. Defaults to TRUE.

Value

Returns two stacked ggplots.

See also

Other plots: plot_prob_infection(), predicted_distribution_fits()

Author

James Hay, jhay@hsph.harvard.edu

Examples